That is why ablative coating is applied and the FV is tuned for performance wrt thermodynamic loading. Read the general description part in the DRDO paper above in the picture. Thermodynamic loading is one of the primary constraints when you are building the guidance algorithm, this parameter affects the optimisation very much, which is why the entire scheme is so much program exhaustive and complex. All 3 phases of flight ie boost phase, midcourse and terminal phase are all with different guidance scheme implemented.
First of all the flight vehicle is made with certain degree of instability. This is important, if the FV aerodynamic design is too stable, it will not be able to produce very high G maneuver without aid of extra fuel spending + heat overload + loss of acceleration as well as payload size would be lesser to compensate the above factors. Hence the design is made so the airframe in flight is unstable to veer off here & there without guidance scheme.
Next, thermodynamic load increases when moving thru atmosphere, lower altitude flight you get more heating in skin. So there are sensors which send data to OBC in flight and once threshold reached or near tolerance limit, program accurately change other parameter to compensate and trajectory is slightly optimised again. This adds the unpredictability part more.
Further, you need to also protect airframe and inside component from heat overload. So ablative coating is applied which can protect the airframe by sacrificing itself, the coating will burn out bit by bit at max loading but protect the airframe. This is where the glide trajectory also play significant that the heat overload is far less acute than directly steep dive. If the airframe approach the atmospheric layer at certain degree/AoA, the thermal loading on skin is far less than if straight dive down plus the lift generated compensate energy needed for maneuvering even in that phase.
So overall, yes the vehicle will have thermal signature but all effects combined will be very hard for any existing AD system to successfully engage.